Identifying Differential Histone Modification Sites from ChIP‐seq Data
Han Xu and Wing‐Kin Sung
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 4, Pages 293-303
BiNGS!SL-seq: A Bioinformatics Pipeline for the Analysis and Interpretation of Deep Sequencing Genome-Wide Synthetic Lethal Screen
Jihye Kim and Aik Choon Tan
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 5, Pages 389-398
Epigenetic Analysis: ChIP-chip and ChIP-seq
Matteo Pellegrini and Roberto Ferrari
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 5, Pages 377-387
Hidden Markov Models for Controlling False Discovery Rate in Genome-Wide Association Analysis
Zhi Wei
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 5, Pages 337-344
Nonhomogeneous Dynamic Bayesian Networks in Systems Biology
Sophie Lèbre, Frank Dondelinger and Dirk Husmeier
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 3, Pages 199-213
JAMIE: A Software Tool for Jointly Analyzing Multiple ChIP-chip Experiments
Hao Wu and Hongkai Ji
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 5, Pages 363-375
Analyzing ChIP-seq Data: Preprocessing, Normalization, Differential Identification, and Binding Pattern Characterization
Cenny Taslim, Kun Huang, Tim Huang and Shili Lin
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 4, Pages 275-291
Using the Bioconductor GeneAnswers Package to Interpret Gene Lists
Gang Feng, Pamela Shaw, Steven T. Rosen, Simon M. Lin and Warren A. Kibbe
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 2, Pages 101-112
Employing Gene Set Top Scoring Pairs to Identify Deregulated Pathway-Signatures in Dilated Cardiomyopathy from Integrated Microarray Gene Expression Data
Aik Choon Tan
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 5, Pages 345-361
Analyzing Cancer Samples with SNP Arrays
Peter Van Loo, Gro Nilsen, Silje H. Nordgard, Hans Kristian Moen Vollan and Anne-Lise Børresen-Dale, et al.
Methods in Molecular Biology, 1, Volume 802, Next Generation Microarray Bioinformatics, Part 2, Pages 57-72